SNP Profiles of GU 125 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
1._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
2._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
3._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
4._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
5._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
6._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
7._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
8._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
9._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
10._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	AA	GG	CC	GG	CC
11._GU_125_/C	CC	GG	CC	CC	TT	TT	TT	CC	CC	_	GG	CC	GG	CC
12._GC-01-138-7-17	CC	GG	CC	CC	TT	TT	TT	CC	CC	_	GG	CC	GG	CC
13._RUQ_188	_	GG	CG	CC	_	_	TT	_	_	_	_	CC	AG	_
14._RUQ_188	CC	GG	CG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AG	CC
15._RUQ_188	CC	GG	CG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AG	CC
16._RUQ_188	_	_	CG	_	_	_	TT	_	CC	_	GG	_	AG	_
17._GC-01-138-7-17	GG	GG	GG	GG	AA	AA	AA	_	_	AA	GG	GG	GG	GG
18._RUQ_188	GG	GG	CG	GG	AA	AA	AA	_	_	AA	GG	GG	AG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
1._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
2._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
3._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
4._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
5._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
6._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
7._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
8._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
9._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
10._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
11._GU_125_/C	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
12._GC-01-138-7-17	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	CC	AA	GG	GG
13._RUQ_188	_	_	_	CC	GG	GG	_	CC	AC	CC	CC	AA	GG	_
14._RUQ_188	AA	GG	CC	CC	GG	GG	AG	CC	AC	CC	CC	AA	GG	GG
15._RUQ_188	AA	GG	CC	CC	GG	GG	AG	CC	AC	CC	CC	AA	GG	GG
16._RUQ_188	_	_	_	_	GG	GG	AG	_	AC	CC	_	AA	_	_
17._GC-01-138-7-17	AA	GG	GG	GG	CC	CC	_	GG	CC	CC	_	AA	_	GG
18._RUQ_188	AA	GG	GG	GG	CC	CC	_	GG	AC	CC	_	AA	_	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
1._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
2._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
3._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
4._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
5._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
6._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
7._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
8._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
9._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
10._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
11._GU_125_/C	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
12._GC-01-138-7-17	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X	X_X
13._RUQ_188	AA	CC	GG	CC	AA	TT	TT	AA	_	_	X_X	X_X	X_X	X_X
14._RUQ_188	AA	CC	GG	CC	AA	TT	TT	AA	AT	GG	X_X	X_X	X_X	X_X
15._RUQ_188	AA	CC	GG	CC	AA	TT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
16._RUQ_188	_	_	GG	_	_	_	_	AA	_	_	X_X	X_X	X_X	X_X
17._GC-01-138-7-17	AA	GG	GG	GG	AA	AA	AA	AA	AA	GG	X_X	X_X	X_X	X_X
18._RUQ_188	AA	GG	GG	GG	AA	AA	AA	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: GU_125_/C

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Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

1._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

2._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

3._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

4._GU_125_/C

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

6._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

7._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._GU_125_/C GC-01-138-7-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._GU_125_/C GC-01-138-7-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._GU_125_/C

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

11._GU_125_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

12._GU_125_/C GC-01-138-7-17

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

13._GU_125_/C RUQ_188

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

17._GU_125_/C GC-01-138-7-17

48.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

18._GU_125_/C RUQ_188

45.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25